A modern replacement for Redis and Memcached

Command & Conquer: Remastered Collection

The Fast Cross-Platform Package Manager

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

A high-performance, concurrent hash table

SPAdes Genome Assembler

The second version of the Kraken taxonomic sequence classification system

Seamless R and C++ Integration

Fast implementation of the edit distance(Levenshtein distance)

Ultra-fast and memory-efficient (meta-)genome assembler

A single molecule sequence assembler for genomes large and small.

Signal-level algorithms for MinION data

Mummer alignment tool

A fast multi-threaded k-mer counter

Application for making ENCODE Blacklists

[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

a minimal C++ interval tree implementation

A gap-closing software tool that uses long reads to enhance genome assembly.

De novo genome assembler for long uncorrected reads

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

Fast alignment and preprocessing of chromatin profiles

DRAGEN open-source mapper

BigWig and BAM utilities

The R package manager that is blazingly fast ⚡. Powered by mamba.

BELLA: a Computationally-Efficient and Highly-Accurate Long-Read to Long-Read Aligner and Overlapper

Efficient target prediction incorporating accessibility of interaction sites

Self-contained, multi-threaded fasta/q parser

ChIP-seq DC and QC Pipeline

Output FASTQ summary statistics in JSON format