A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

Extensive de-novo TE Annotator

A collection of sequencing protocols and bioinformatic resources for SARS-CoV-2 sequencing.

Allele-specific alignment sorting

Hi-C data processing pipeline

HiCorr: a Hi-C data bias-correction pipeline

TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data

Transposon Insertion Finder - Detection of new TE insertions in NGS data

Scripts for bioinformatics data processing and analysis

tool to Identify TE Insertion Sites in genome

Scripts to analyze chromatin immunoprecipitation data