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Neural networks for cryo-EM reconstruction

Python 365 85 Updated Dec 17, 2025

A single-cell RNA-seq pipeline

R 26 14 Updated Apr 12, 2023

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

R 606 119 Updated Nov 28, 2025

A cool place to store your Hi-C

Python 231 58 Updated Dec 15, 2025

Gene set enrichment analysis for single-cell RNAseq data

R 30 6 Updated Feb 17, 2023
Jupyter Notebook 3 Updated Oct 23, 2025

Fast, sensitive and accurate integration of single-cell data with Harmony

R 615 104 Updated Oct 10, 2025

Python client library for working with NASA’s Earth observing system data using Harmony. https://harmony.earthdata.nasa.gov

Python 69 28 Updated Nov 24, 2025

Collections of library structure and sequence of popular single cell genomic methods

HTML 487 105 Updated May 19, 2025

machine-readable file format for genomic library sequence and structure

Python 125 17 Updated Sep 6, 2025

Gossamer bioinformatics suite

C++ 22 19 Updated Dec 4, 2024

Read Carl Zeiss image files (CZI).

Python 31 9 Updated Feb 19, 2025

QuickFigures is a toolset for creating scientific figures see publication for details

Java 35 6 Updated Feb 4, 2024

Tools and Data related to Enzymatic Methylation Sequencing

Nextflow 28 7 Updated Dec 18, 2025

DeepSeek Coder: Let the Code Write Itself

Python 22,516 2,685 Updated Nov 11, 2025

TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…

Python 202 27 Updated Nov 23, 2025

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

Shell 228 17 Updated Nov 20, 2025

利用python内置smtplib,email模块,基于smtp协议,实现自动化发送邮件

Python 5 1 Updated Aug 15, 2018

Quick serialization of R objects

C 434 20 Updated Nov 7, 2025

Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)

R 63 15 Updated Apr 12, 2021

PepQuery: a targeted peptide search engine

Java 13 2 Updated May 1, 2024

A generative speech model for daily dialogue.

Python 38,355 4,163 Updated Dec 3, 2025

Aggregate results from bioinformatics analyses across many samples into a single report.

JavaScript 1,400 645 Updated Dec 19, 2025

Filtering and profiling of next-generational sequencing data using region-specific rules

Makefile 25 6 Updated May 17, 2016

Allele-specific alignment sorting

Perl 61 21 Updated Jan 7, 2023

Remote protein homology detection suite.

C 604 148 Updated Aug 12, 2025

cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

R 749 84 Updated Jul 7, 2025

RNA-seq aligner

C 2,096 542 Updated Mar 18, 2025

Text To Video Synthesis Colab

Jupyter Notebook 1,513 184 Updated Mar 28, 2024

Making Protein Design accessible to all via Google Colab!

Python 856 210 Updated Dec 8, 2025
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