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🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
https://www.sc-best-practices.org
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HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
Neural networks for cryo-EM reconstruction
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Gene set enrichment analysis for single-cell RNAseq data
Fast, sensitive and accurate integration of single-cell data with Harmony
Python client library for working with NASA’s Earth observing system data using Harmony. https://harmony.earthdata.nasa.gov
Collections of library structure and sequence of popular single cell genomic methods
machine-readable file format for genomic library sequence and structure
QuickFigures is a toolset for creating scientific figures see publication for details
Tools and Data related to Enzymatic Methylation Sequencing
DeepSeek Coder: Let the Code Write Itself
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…
Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.
Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
A generative speech model for daily dialogue.
Aggregate results from bioinformatics analyses across many samples into a single report.
Filtering and profiling of next-generational sequencing data using region-specific rules