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amplitools Public
Tools for working with amplicon sequencing data
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simple_pop_stats Public
A short analysis of population statistics given specific inputs
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impute_workflow Public
Imputation workflow for working with amplicon panel and wgrs data
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ms_cgig_chr8_oshv1 Public
Repository to accompany OsHV-1 analyses of CHR8 data, including imputation.
R UpdatedJul 17, 2025 -
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ms_oner_estu Public
Code to support analysis of Early Stuart sockeye metapopulation
R UpdatedMay 28, 2025 -
ms_cgig_chr8_vibrio Public
Repository to accompany Vibrio analyses of CHR8 data.
R UpdatedMar 10, 2025 -
wgrs_workflow Public
Workflow to support genotyping of moderate/ high depth whole-genome resequence data.
Shell GNU General Public License v3.0 UpdatedFeb 11, 2025 -
ms_pike_popgen Public
A repository to accompany the analysis of the northern pike popgun study
R UpdatedJun 26, 2024 -
ms_oyster_panel Public
Repository for code to support the manuscript to design a Pacific oyster amplicon panel
R UpdatedApr 12, 2024 -
ms_harbour_seal Public
Repository to accompany population genetics analysis of harbour seal manuscript.
R UpdatedJan 16, 2024 -
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amplitargets Public
Target repository for panels designed and compatible with amplitools
UpdatedAug 22, 2023 -
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poolparty Public
Forked from jsnelsonbsu/poolpartyWhole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R
Shell MIT License UpdatedAug 4, 2022 -
eDNA_metabarcoding Public
Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)
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ms_oyster_popgen Public
Analysis of the Moore oyster project, Population Genomics
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eRNA_taxo Public
A pipeline to conduct phylogenetics and functional transcriptomics on environmental DNA and RNA
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fasta_SNP_extraction Public
Extract a section of a reference genome flanking an input locus with SNPs.
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2016_ms_sfonmap Public
Code required to collect data and analyze the high density S. fontinalis genetic map project.
R UpdatedSep 18, 2019 -
coregonus_mapcomp Public
Collect and format Coregonus genetic map input data for MapComp analysis
R UpdatedSep 18, 2019 -
assembly_metrics Public
Assess the results of a genome assembly through various metrics (e.g. N50, total length, BUSCO)
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sfon_wgcna Public
Analysis of Brook Charr and Arctic Charr gene co-expression networks
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SING_Canada_2018_genetics Public
Associated code for analysis of SING 2018 genetic data
R UpdatedNov 21, 2018 -
salp_anon_to_salp Public
Perform MapComp iteratively to attach anonymous Arctic Charr markers onto the Arctic Charr genetic map.
R UpdatedOct 10, 2017 -
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