Database interface for storing genotype, phenotype, and pedigree information

lumpy: a general probabilistic framework for structural variant discovery

genome reduction sequences quality control

view and locate recombinations positions using pedigree data

AlphaImpute2: pedigree- and population-based genotype imputation

Genome-wide Efficient Mixed Model Association

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Forked from https://sourceforge.net/p/popoolation2/

Software for painlessly estimating average nucleotide diversity within and between populations

Where's my Heterozygotes at? Observations on genotyping Accuracy

genotyping microhaplotypes

Functions for manipulating microhap (and other genotype) data developed for EFGL

microhaplotype visualizer and analyzer

Website for MarineOmics RCN-ECS. Hosts pages for panelist series and recommended practices for non-model genomics.

Automatically exported from code.google.com/p/figtree

Transfer coordinates across genomes

Tools for working with amplicon sequencing data

Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R

Developing guidelines for adding sequence data to OBIS

efficient sampling for close-kin mark recapture power estimation

Pipeline to analyze eDNA metabarcoding samples (PE and SE, demultiplexed, multiplexed)

A short analysis of population statistics given specific inputs

R package for handling microhaplotypes