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11 stars written in C++
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🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

C++ 843 174 Updated May 29, 2024

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

C++ 660 225 Updated Oct 31, 2025

Signal-level algorithms for MinION data

C++ 589 161 Updated Aug 5, 2023

A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

C++ 538 149 Updated May 15, 2025

Transcript assembly and quantification for RNA-Seq

C++ 472 85 Updated Oct 22, 2025

Genome-wide Efficient Mixed Model Association

C++ 381 132 Updated Jun 27, 2025

Program for analysing NGS data.

C++ 247 54 Updated Mar 6, 2025
C++ 131 52 Updated Jul 9, 2023

Software for clustering de novo assembled transcripts and counting overlapping reads

C++ 75 20 Updated Feb 11, 2022

A package for population structure inference from RAD-seq data

C++ 34 8 Updated May 14, 2021

genotyping microhaplotypes

C++ 4 1 Updated Oct 17, 2023