a bash pipeline for RAD sequencing

Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R

Genetic Map Comparison

Downsample fastq files in an automated way

Workflow for the improvement of genetic maps and genome assemblies based on Chromonomer tools

Genome annotation : Tools compilation

From raw illumina reads data to counts

Assess the results of a genome assembly through various metrics (e.g. N50, total length, BUSCO)

script for RAD/GBS data using stacks v2 single end or paired-end

A small patch for Celera Assembler to add SLURM support

Repository for the ResBaz Oslo 2019 workshop "Get (even) smarter with the Unix shell"

used as a pipeline to quality trim, then collapse overlapping reads (e.g. paired-end where insert size is less than the length of R1 + R2)

Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R