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14 stars written in Python
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Python library to handle Gene Ontology (GO) terms

Python 867 215 Updated Sep 14, 2025

A comparison of different Oxford Nanopore basecallers

Python 315 52 Updated Aug 5, 2019

Software for painlessly estimating average nucleotide diversity within and between populations

Python 148 18 Updated Oct 27, 2025

A variational framework for inferring population structure from SNP genotype data.

Python 143 49 Updated Jan 6, 2023

WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery

Python 107 52 Updated Apr 23, 2021

Collection of various scripts

Python 82 42 Updated Oct 22, 2025

eDNA metabarcoding pipeline

Python 40 11 Updated Nov 5, 2025

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds

Python 33 13 Updated Nov 26, 2015

Transcripts annotation and GO enrichment Fisher tests

Python 27 17 Updated Apr 28, 2023

Transfer coordinates across genomes

Python 23 1 Updated May 23, 2025

AlphaImpute2: pedigree- and population-based genotype imputation

Python 12 8 Updated Apr 25, 2025

Companion scripts for annotation of Corset generated transcript clusters.

Python 9 4 Updated Aug 7, 2020

A collection of simple bioinformatic scripts

Python 3 8 Updated Feb 28, 2017

Database interface for storing genotype, phenotype, and pedigree information

Python 1 Updated Sep 8, 2025