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Pull requests: biopython/biopython
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allow to read and write nonstandard GC, GS, GR lines in Stockholm format
#4504
by trichter
was merged Dec 16, 2023
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Remove deprecated code from Bio.SeaFeature
#4503
by mdehoon
was merged Nov 21, 2023
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3 tasks done
Add similarity string extraction for hmmer3-text
#4500
by bow
was merged Nov 19, 2023
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3 tasks done
Remove deprecated code from Bio.Seq for release 1.82
#4498
by mdehoon
was merged Nov 20, 2023
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3 tasks done
Remove the deprecated module Bio.Wise.
#4495
by mdehoon
was merged Nov 17, 2023
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removed deprecated modules and function in Bio.SeqUtils
#4493
by mdehoon
was merged Nov 17, 2023
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3 tasks done
Remove the parser for plain text output from Blast
#4488
by mdehoon
was merged Nov 7, 2023
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3 tasks done
Check the contents of the Blast header in test_NCBIXML
#4487
by mdehoon
was merged Nov 6, 2023
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3 tasks done
Fix alignment printing for frameshifts
#4485
by mdehoon
was merged Nov 3, 2023
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3 tasks done
Stop using flake8 to check whitespace - just trust black
#4483
by peterjc
was merged Nov 3, 2023
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3 tasks done
Assorted style fixes from the tool ruff
#4481
by peterjc
was merged Nov 2, 2023
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Add missing molecule types in EMBL writer
#4480
by kimrutherford
was merged Nov 1, 2023
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Check sorting of CONTRIB.rst vis pre-commit
#4478
by peterjc
was merged Jun 26, 2024
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update substitution matrix reading to ensure files are closed
#4476
by byerlyj
was merged Nov 2, 2023
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3 tasks done
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