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Pull requests: biopython/biopython

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Pull requests list

New Blast parser and qblast
#4505 by mdehoon was merged Jan 2, 2024 Loading…
3 tasks done
allow to read and write nonstandard GC, GS, GR lines in Stockholm format
#4504 by trichter was merged Dec 16, 2023 Loading…
3 tasks done
Remove deprecated code from Bio.SeaFeature
#4503 by mdehoon was merged Nov 21, 2023 Loading…
3 tasks done
Remove deprecated title2ids argument
#4502 by mdehoon was merged Nov 20, 2023 Loading…
3 tasks done
Issue4492 structured comments
#4501 by biologyguy was merged Dec 19, 2023 Loading…
3 tasks done
Add similarity string extraction for hmmer3-text
#4500 by bow was merged Nov 19, 2023 Loading…
3 tasks done
Fix compiler warning
#4499 by mdehoon was merged Nov 17, 2023 Loading…
3 tasks done
Remove deprecated code from Bio.Seq for release 1.82
#4498 by mdehoon was merged Nov 20, 2023 Loading…
3 tasks done
Remove Bio.Blast.ParseBlastTable
#4497 by mdehoon was merged Nov 17, 2023 Loading…
3 tasks done
Remove Bio.Data.SCOPData
#4496 by mdehoon was merged Nov 17, 2023 Loading…
3 tasks done
Remove the deprecated module Bio.Wise.
#4495 by mdehoon was merged Nov 17, 2023 Loading…
3 tasks done
removed deprecated modules and function in Bio.SeqUtils
#4493 by mdehoon was merged Nov 17, 2023 Loading…
3 tasks done
Allow Entrez.parse("myfilename")
#4490 by mdehoon was merged Nov 13, 2023 Loading…
3 tasks done
Remove the parser for plain text output from Blast
#4488 by mdehoon was merged Nov 7, 2023 Loading…
3 tasks done
Check the contents of the Blast header in test_NCBIXML
#4487 by mdehoon was merged Nov 6, 2023 Loading…
3 tasks done
Uniprot error
#4486 by lurkingviolet was merged Nov 7, 2023 Loading…
Fix alignment printing for frameshifts
#4485 by mdehoon was merged Nov 3, 2023 Loading…
3 tasks done
Stop using flake8 to check whitespace - just trust black
#4483 by peterjc was merged Nov 3, 2023 Loading…
3 tasks done
PyMethodDef ml_meth compiler warning
#4482 by mdehoon was merged Nov 2, 2023 Loading…
3 tasks done
Assorted style fixes from the tool ruff
#4481 by peterjc was merged Nov 2, 2023 Loading…
3 tasks done
Add missing molecule types in EMBL writer
#4480 by kimrutherford was merged Nov 1, 2023 Loading…
3 tasks done
Align codonaligner
#4479 by mdehoon was merged Nov 2, 2023 Loading…
3 tasks done
Check sorting of CONTRIB.rst vis pre-commit
#4478 by peterjc was merged Jun 26, 2024 Loading…
3 tasks done
SeqRecord does not check type of Seq argument
#4477 by netogallo was merged Nov 16, 2023 Loading…
update substitution matrix reading to ensure files are closed
#4476 by byerlyj was merged Nov 2, 2023 Loading…
3 tasks done
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