Applied Computational Genomics Course at UU: Spring 2020

Collections of library structure and sequence of popular single cell genomic methods

Web application to explore the Sequence Read Archive.

A Shiny web app for mapping datasets using Seurat v4

Significance analysis for clustering single-cell RNA-sequencing data

A simple, fast, free & easy to use static based plain HTML template. That allows you to make a beautiful personal / blog or technical documentation website really quickly.

Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods

This contains the dataset for comparing scRNA-seq analysis methods

Workshop in omics integration and systems biology

a pipeline for single cell RNA-seq data analysis

VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps

Workflow for single-cell RNA-seq analysis using Seurat

A study to compare methods for clustering of scRNA-seq data

Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.

An open source and flexible pipeline to analyze DNBelab C Series single-cell RNA datasets.

R package for benchmarking single cell analysis methods

An interactive radial tree for functional hierarchies and omics data visualization

Tool to help visualize data after BLAST by generating pathways on KEGG using an input file of genes and their associated KEGG accession.

A pipeline for scRNA analysis under HPC

Code, data and results associated with the "Rare diseases cell-typing" project.

This repository contains the teaching material created by the Cell Discovery Network