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Starred repositories

24 stars written in Jupyter Notebook
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12 weeks, 26 lessons, 52 quizzes, classic Machine Learning for all

Jupyter Notebook 78,647 18,168 Updated Oct 24, 2025

This repository contains implementations and illustrative code to accompany DeepMind publications

Jupyter Notebook 14,430 2,778 Updated Aug 22, 2025

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Jupyter Notebook 1,527 479 Updated Dec 11, 2022
Jupyter Notebook 1,366 290 Updated Aug 30, 2025

https://www.sc-best-practices.org

Jupyter Notebook 1,045 239 Updated Jul 17, 2025

Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

Jupyter Notebook 509 77 Updated Jan 5, 2024

scripts and notebooks from sanbomics

Jupyter Notebook 448 164 Updated Nov 25, 2024

Reference mapping for single-cell genomics

Jupyter Notebook 387 64 Updated Oct 2, 2025

Examples of single-cell genomic analysis accelerated with RAPIDS

Jupyter Notebook 345 70 Updated Aug 27, 2025

A short course on Julia and open-source software development

Jupyter Notebook 320 38 Updated Mar 13, 2023

Google Colab Tutorials for IBM3202

Jupyter Notebook 269 89 Updated Nov 6, 2024

AWS for Bioinformatics Researchers

Jupyter Notebook 182 41 Updated Jul 17, 2025

Detect doublets in single-cell RNA-seq data

Jupyter Notebook 158 76 Updated Dec 29, 2020
Jupyter Notebook 122 24 Updated Jun 15, 2025

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

Jupyter Notebook 79 49 Updated Jan 24, 2022

Finding gene expression states in scRNA-seq data

Jupyter Notebook 51 6 Updated Mar 22, 2024
Jupyter Notebook 44 6 Updated Oct 30, 2024

benchmark for single-cell RNA-seq imputation methods

Jupyter Notebook 29 7 Updated Mar 16, 2024

Simulate patients with rare genetic conditions

Jupyter Notebook 24 2 Updated Jul 28, 2023
Jupyter Notebook 10 Updated Jul 5, 2023

Python pipelines for analysis of adipocyte scRNA-seq data

Jupyter Notebook 6 4 Updated Oct 31, 2025

White Blood Cells detection (1st place)

Jupyter Notebook 4 Updated Jan 12, 2025

Computational workshop material for the HCA thailand training lives here

Jupyter Notebook 3 2 Updated Jul 12, 2024

Measure the similarity between cells from 2 different scRNAseq datasets

Jupyter Notebook 3 Updated Nov 8, 2024