GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts

Improved Inference of Ortholog Groups using Hidden Markov Models

Scalable Maximum Likelihood Estimation of Phylogenetic Models

Official repository for the Boltz biomolecular interaction models

A high efficiency binary format for sequencing data

A web-based, lighter version of Gephi

Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

protein utilities in Rust

Reorients assembled microbial sequences

A NumPy port of the foldseek code for encoding protein structures to 3di.

ATProto Feed Generator Starter Kit

Python package for creating and interacting with graph databases of protein domains and their genome coordinates

Accelerated BLAST compatible local sequence aligner.

What the f*ck Python? 😱

Fast indexing and search of discontinuous motifs in protein structures

Vector graphics cartoons from protein structure

A curated list of resources for protein analysis on AWS

A self-paced course to learn Rust, one exercise at a time.

This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.

Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

Robs manual for the computational genomics and bioinformatics class.

Protein Structure Analysis

A Data Streaming Library for Efficient Neural Network Training

Implementation of Alphafold 3 from Google Deepmind in Pytorch

Logan Unitigs and Contigs

AI for discovering 100% valid drug like molecules, a combination of VAE-JTNN and bayesian optimization, an optimized Python 3 Version of Junction Tree Variational Autoencoder for Molecular Graph Ge…

Get protein embeddings from protein sequences

Evolutionary Scale Modeling (esm): Pretrained language models for proteins