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guppy_on_slurm Public
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
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inspector-rs Public
A rust attempted rewrite of the genome QC tool inspector
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EVidenceModeler_rust Public
Forked from hyphaltip/EVidenceModeler_rustRust port of EVidenceModeler — consensus gene modeler
Rust BSD 3-Clause "New" or "Revised" License UpdatedSep 18, 2026 -
awesome-pangenomes Public
A list of software for pangenomics
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rs_demultiplex Public
Simple but fast demultiplexing of FASTQ
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microBioRust Public
Forked from LCrossman/microBioRustRust bioinformatics crate aimed at Microbial genomics
Rust MIT License UpdatedJul 28, 2026 -
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blacklister Public
Improve your metagenomic reference sequence: Simple adapter and contamination FASTA masking using bowtie2 and bedtools
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oligowords Public
Sliding-window oligonucleotide composition analysis of DNA sequences - rewritten in Rust
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kuva Public
Forked from Psy-Fer/kuvaA scientific plotting library in Rust
Rust MIT License UpdatedApr 22, 2026 -
KFC Public
Forked from lrobidou/KFCRust GNU Affero General Public License v3.0 UpdatedApr 14, 2026 -
pafplot Public
Forked from ekg/pafplotbase-level dotplots from PAF alignments
Rust MIT License UpdatedMar 30, 2026 -
faster Public
Forked from angelovangel/fasterA (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
Rust MIT License UpdatedMar 20, 2026 -
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GAEP Public
Forked from zy-optimistic/GAEPA genome assembly assessment pipeline.
Perl GNU General Public License v3.0 UpdatedMar 18, 2026 -
maffer Public
Forked from pangenome/mafferextract MSAs from genome variation graphs
C++ Other UpdatedMar 3, 2026 -
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HelixerPost Public
Forked from usadellab/HelixerPost -
Red Public
Forked from brunocontrerasmoreira/RedRed: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
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fastplong Public
Forked from OpenGene/fastplongUltra-fast preprocessing and quality control for long-read sequencing data
C++ MIT License UpdatedSep 6, 2025 -
minisplice Public
Forked from lh3/minispliceScoring GT/AG sites for improving spliced alignment
C UpdatedJun 4, 2025 -
temme_2025_higs Public
Sequence data and supporting information for Temme et al 2025 HIGS
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psrecord Public
Forked from astrofrog/psrecordRecord the CPU and memory activity of a process 📈
Python BSD 2-Clause "Simplified" License UpdatedJan 8, 2025 -
csvtk Public
Forked from shenwei356/csvtkA cross-platform, efficient and practical CSV/TSV toolkit in Golang
Go MIT License UpdatedNov 18, 2024 -
GSP Public
Forked from bioinfogenome/GSPA tool for Genome Specific Primers design in polyploid species
C++ UpdatedOct 15, 2024 -
TransDecoder Public
Forked from TransDecoder/TransDecoderTransDecoder source
Perl Other UpdatedOct 2, 2024 -
awesome-awesomeness-bioinformatics Public
Forked from Juke34/awesome-awesomeness-bioinformaticsA curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas
Creative Commons Attribution 4.0 International UpdatedSep 17, 2024 -
raspir Public
Forked from mmpust/raspirRaspir, the rare species identifier
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