-
inspector-rs Public
A rust attempted rewrite of the genome QC tool inspector
-
pafplot Public
Forked from ekg/pafplotbase-level dotplots from PAF alignments
Rust MIT License UpdatedMar 30, 2026 -
awesome-pangenomes Public
A list of software for pangenomics
-
-
GAEP Public
Forked from zy-optimistic/GAEPA genome assembly assessment pipeline.
Perl GNU General Public License v3.0 UpdatedMar 18, 2026 -
maffer Public
Forked from pangenome/mafferextract MSAs from genome variation graphs
C++ Other UpdatedMar 3, 2026 -
-
Red Public
Forked from brunocontrerasmoreira/RedRed: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
-
fastplong Public
Forked from OpenGene/fastplongUltra-fast preprocessing and quality control for long-read sequencing data
C++ MIT License UpdatedSep 6, 2025 -
minisplice Public
Forked from lh3/minispliceScoring GT/AG sites for improving spliced alignment
C UpdatedJun 4, 2025 -
temme_2025_higs Public
Sequence data and supporting information for Temme et al 2025 HIGS
-
-
psrecord Public
Forked from astrofrog/psrecordRecord the CPU and memory activity of a process 📈
Python BSD 2-Clause "Simplified" License UpdatedJan 8, 2025 -
csvtk Public
Forked from shenwei356/csvtkA cross-platform, efficient and practical CSV/TSV toolkit in Golang
Go MIT License UpdatedNov 18, 2024 -
GSP Public
Forked from bioinfogenome/GSPA tool for Genome Specific Primers design in polyploid species
C++ UpdatedOct 15, 2024 -
TransDecoder Public
Forked from TransDecoder/TransDecoderTransDecoder source
Perl Other UpdatedOct 2, 2024 -
awesome-awesomeness-bioinformatics Public
Forked from Juke34/awesome-awesomeness-bioinformaticsA curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas
Creative Commons Attribution 4.0 International UpdatedSep 17, 2024 -
raspir Public
Forked from mmpust/raspirRaspir, the rare species identifier
-
guppy_on_slurm Public
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
-
-
GINGER Public
Forked from i10labtitech/GINGERC++ GNU General Public License v3.0 UpdatedJan 17, 2024 -
pomoxis Public
Forked from nanoporetech/pomoxisAnalysis components from Oxford Nanopore Research
Python Other UpdatedJan 4, 2024 -
jbrowse2_utils Public
Bash scripts for writing assemblies and tracks to JBrowse2 https://jbrowse.org/jb2/
-
awesome-nanopore Public
Forked from GoekeLab/awesome-nanoporeA curated list of awesome nanopore analysis tools.
MIT License UpdatedOct 27, 2023 -
differentialabundance Public
Forked from nf-core/differentialabundanceDifferential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Nextflow MIT License UpdatedOct 5, 2023 -
genome_assembly_tools Public
Forked from nadegeguiglielmoni/genome_assembly_toolsList of genome assembly tools
Python UpdatedJun 20, 2023 -
awesome-HiC Public
Forked from ningbioinfo/awesome-HiCAwesome list of HiC data analysing tools
UpdatedMay 3, 2023 -
Inspector Public
Forked from Maggi-Chen/InspectorA tool for evaluating long-read de novo assembly results
Python MIT License UpdatedMar 20, 2023 -
Mauve Public
Forked from gerbenvoshol/MauveMauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion.
C++ UpdatedFeb 17, 2023 -
rusty_samplesheet Public
Very simple Illumina SampleSheet validation in Rust. Make your biologists check their own custom SampleSheets! Can be compiled for Windows users.
{{ message }}