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Roughly comparing Parquet, Vortex, and Lance performance.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedDec 18, 2025 -
CytoTable Public
Forked from cytomining/CytoTableTransform data for processing image-based profiling readouts with Pycytominer.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 15, 2025 -
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almanac Public
Forked from software-gardening/almanackAn open-source handbook of applied guidance and tools for sustainable software development and maintenance.
BSD 3-Clause "New" or "Revised" License UpdatedDec 9, 2025 -
vortex Public
Forked from vortex-data/vortexAn extensible, state of the art columnar file format. Formerly at @spiraldb, now an Incubation Stage project at LFAI&Data, part of the Linux Foundation.
Rust Apache License 2.0 UpdatedDec 9, 2025 -
pycytominer Public
Forked from cytomining/pycytominerPython package for processing image-based profiling data
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 8, 2025 -
ome-arrow Public
Forked from WayScience/ome-arrowUsing OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 5, 2025 -
duck_goose Public
Experiment with model context protocol (MCP)
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedDec 1, 2025 -
coSMicQC Public
Forked from cytomining/coSMicQCcoSMicQC is a software tool for single-cell quality control of morphology datasets.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 1, 2025 -
us-rse-org-membership-gov Public
Forked from CU-DBMI/us-rse-org-membership-govRepository for governing US-RSE organizational membership.
BSD 3-Clause "New" or "Revised" License UpdatedDec 1, 2025 -
napari-ome-arrow Public
Forked from WayScience/napari-ome-arrowA Napari plugin for OME-Arrow and OME-Parquet bioimage data
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 1, 2025 -
set-presentations Public
Forked from CU-DBMI/set-presentationsA repository for presentations from the DBMI Software Engineering Team (SET)
BSD 3-Clause "New" or "Revised" License UpdatedNov 30, 2025 -
copairs Public
Forked from cytomining/copairsFind profile pairs and compute metrics between them.
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 30, 2025 -
manubot Public
Forked from manubot/manubotPython utilities for Manubot: Manuscripts, open and automated
Python Other UpdatedNov 29, 2025 -
CytoDataFrame Public
Forked from cytomining/CytoDataFrameAn in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.
BSD 3-Clause "New" or "Revised" License UpdatedNov 20, 2025 -
napari-plugin-template Public
Forked from napari/napari-plugin-templateA template repo used to make new napari plugins
Jinja BSD 3-Clause "New" or "Revised" License UpdatedNov 18, 2025 -
mitocheck_data Public
Forked from WayScience/mitocheck_dataAll information regarding the download and processing of Mitocheck data from IDR study with accession idr0013 (screenA).
Jupyter Notebook Creative Commons Zero v1.0 Universal UpdatedNov 17, 2025 -
template-uv-python-research-software Public
Forked from CU-DBMI/template-uv-python-research-softwareA template for Pythonic research software with environment management through uv.
Jinja BSD 3-Clause "New" or "Revised" License UpdatedNov 7, 2025 -
nViz Public
Forked from WayScience/nVizA tool for creating and visualizing n-dimensional microscopy images.
Python BSD 3-Clause "New" or "Revised" License UpdatedNov 4, 2025 -
sbi2-org.github.io Public
Forked from sbi2-org/sbi2-org.github.ioBSD 3-Clause "New" or "Revised" License UpdatedOct 28, 2025 -
set-website Public
Forked from CU-DBMI/set-websiteWebsite for the software engineering team (SET)
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NF1_organoid_cell_segmentation Public
Forked from WayScience/NF1_organoid_cell_segmentationDeep learning–based vision model for segmentation of cells within NF1 organoids.
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 20, 2025 -
CPBS7601 Public
Forked from WayScience/CPBS7601Course on computing skills in biomedical informatics
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 20, 2025 -
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CytoTable-benchmarks Public
Forked from cytomining/CytoTable-benchmarksBenchmarks for CytoTable and related.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 16, 2025 -
.github-sbi2-org Public
Forked from sbi2-org/.githubBSD 3-Clause "New" or "Revised" License UpdatedOct 14, 2025 -
serpula_rasa Public
Forked from WayScience/serpula_rasaBlank snake implementation prototype for image-based single-cell profiling
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedOct 1, 2025 -
onesentence Public
Forked from CU-DBMI/onesentenceA pre-commit check for semantic line breaks.
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 30, 2025 -
demo-vs-code-notebook-root Public
Forked from WayScience/demo-vs-code-notebook-rootDemonstrating how to set a notebook root for vs code through a repository.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedSep 23, 2025 -
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