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Software gardening...
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Software gardening...
91 followers · 258 following

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Achievements

Achievement: Pull Sharkx4Achievement: StarstruckAchievement: Pair Extraordinairex4Achievement: YOLOAchievement: Quickdraw

Organizations

@conda-forge @cytomining @sphinx-contrib @nf-core @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening @xqlsystems

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d33bs/README.md

Hi, I'm Dave 👋

I'm a software engineer and technical leader focused on open-source data infrastructure, analytical systems, and software for complex scientific data.

I've been on Github for 13 years. During that time I've contributed to 116 repositories, opened 838 issues, performed 1459 code reviews, and have opened 1203 pull requests.

I maintain 21 Python packages on PyPI (downloaded 3,004 times last month), have 33 archived releases on Zenodo, and my work has received 83 citations.

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  1. WayScience/ome-arrow WayScience/ome-arrow Public

    Using OME specifications with Apache Arrow for fast, queryable, and language agnostic bioimage data.

    Python 8 1

  2. cytomining/CytoTable cytomining/CytoTable Public

    Harmonize high-content image analysis tool outputs for processing with Pycytominer and other Cytomining tools.

    Python 22 6

  3. cytomining/CytoDataFrame cytomining/CytoDataFrame Public

    An in-memory data analysis format for single-cell profiles alongside their corresponding images and segmentation masks.

    Python 13 2

  4. cytomining/pycytominer cytomining/pycytominer Public

    Python package for image-based profiling

    Python 145 42

  5. software-gardening/almanack software-gardening/almanack Public

    An open-source handbook of applied guidance and tools for sustainable software development and maintenance.

    Jupyter Notebook 25 6

  6. xqlsystems/duckdb-zarr xqlsystems/duckdb-zarr Public

    Query Zarr stores with SQL directly from DuckDB

    Rust 58 4