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Software gardening...
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Software gardening...

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@conda-forge @cytomining @sphinx-contrib @nf-core @University-of-Colorado-Anschutz-Denver @UCBoulder @CU-DBMI @WayScience @software-gardening

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Empowering People Ethically 🚀 — Matomo is hiring! Join us → https://matomo.org/jobs Matomo is the leading open-source alternative to Google Analytics, giving you complete control and built-in priva…

PHP 21,109 2,792 Updated Dec 19, 2025

patool is a portable command line archive file manager

Python 446 70 Updated Dec 11, 2025

A small library for automatical adjustment of text position in matplotlib plots to minimize overlaps.

Jupyter Notebook 1,632 92 Updated Apr 22, 2025

A developer's guide to management: an open-sourced handbook for leading software engineering teams.

1,566 97 Updated Jan 24, 2020

An Intelligent Python Code Quality Analyzer

Go 949 45 Updated Dec 15, 2025

The GitHub Action for Promptfoo. Test your prompts, agents, and RAGs. AI Red teaming, pentesting, and vulnerability scanning for LLMs. Compare performance of GPT, Claude, Gemini, Llama, and more. S…

TypeScript 31 14 Updated Dec 19, 2025

A set of tools for characterizing and analyzing 3D images of porous materials

Python 380 112 Updated Dec 10, 2025

Enrich SBOMs with data from third party services

Go 203 32 Updated Dec 18, 2025

A user friendly TUI for SQL databases. Written in python. Supports SQL server, Mysql, PostreSQL and SQLite, Turso and more.

Python 994 21 Updated Dec 19, 2025

ShapeEmbedLite: a lightweight self-supervised representation learning model for 2D shape analysis

Python 18 3 Updated Oct 13, 2025

Babel creates cliques of equivalent identifiers across many biomedical vocabularies.

Python 12 3 Updated Dec 18, 2025

Reduce logs to their semantic anomalies

Python 118 5 Updated Dec 19, 2025

Statistical Rethinking Course 2026

73 1 Updated Dec 9, 2025

😇 Gentleman Guardian Angel (gga) - Provider-agnostic code review using AI. Use Claude, Gemini, Codex, Ollama to enforce your coding standards.

Shell 399 34 Updated Dec 16, 2025

reusable widgets made easy

Python 810 58 Updated Dec 15, 2025

Codebase for "A Foundation Model for Cell Segmentation"

Python 151 28 Updated Nov 11, 2025

AnyBlox runtime and tooling

C 21 1 Updated Sep 4, 2025

R package for working with medical coding schema and identifying records with specific comorbidities

Rich Text Format 4 Updated Dec 19, 2025

Tracking repository for SEA site

4 7 Updated Nov 19, 2025

cuTile is a programming model for writing parallel kernels for NVIDIA GPUs

Python 1,630 83 Updated Dec 19, 2025

This repository contains scripts testing aggregate degree weighted path count (DWPC) statistics.

Jupyter Notebook 1 1 Updated Dec 10, 2025

Marmot helps teams discover, understand, and leverage their data with powerful search and lineage visualisation tools. It's designed to make data accessible for everyone.

Go 450 13 Updated Dec 17, 2025

Workflows and interfaces for neuroimaging packages

Python 800 537 Updated Oct 27, 2025

Python package to access a cacophony of neuro-imaging file formats

Python 754 271 Updated Dec 5, 2025

SAM-Med3D: An Efficient General-purpose Promptable Segmentation Model for 3D Volumetric Medical Image

Python 826 108 Updated Sep 21, 2025

Python disk-backed cache (Django-compatible). Faster than Redis and Memcached. Pure-Python.

Python 2,747 155 Updated Aug 10, 2024

Sample code that explores an architecture for using language models to build a personal agent that can work with application agents.

TypeScript 598 82 Updated Dec 19, 2025

This repo is a list of papers that discuss errors in research due to software errors

TeX 89 11 Updated Dec 15, 2025

🌄 CDF Landscape: a living document that developers, investors, vendors, researchers and others can use as a resource on the landscape of continuous delivery

127 72 Updated Oct 9, 2025

Exploring how to better utilize Lab In The Loop (LITL) data in agentic systems with DSPy. Built with DSPy, this repo provides modular agent tools and academic experiments on PRISM-inspired drug rep…

Jupyter Notebook 1 1 Updated Dec 12, 2025
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