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pil Public
Forked from mklarqvist/pilLanguage-independent and schema-agnostic columnar memory format for genomics data
C++ Apache License 2.0 UpdatedMar 15, 2019 -
seqmini Public
C++ code for creating minimizer indices on arbitrary FASTA / GFA
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interleave-fastq Public
Forked from ekg/interleave-fastqinterleaves fastq files (also gzipped ones!)
Python MIT License UpdatedMar 10, 2019 -
gene_lists Public
Forked from macarthur-lab/gene_listsList of gene lists for genomic analyses.
Python UpdatedMar 3, 2019 -
VariantBam Public
Forked from walaj/VariantBamFiltering and profiling of next-generational sequencing data using region-specific rules
Makefile Other UpdatedMar 1, 2019 -
LaunChair Public
A small python utility which can execute a list of commands in parallel
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gatk4-germline-snps-indels Public
Forked from gatk-workflows/gatk4-germline-snps-indelsWorkflows for germline short variant discovery with GATK4
WDL BSD 3-Clause "New" or "Revised" License UpdatedFeb 28, 2019 -
docker-kraken2 Public
Forked from FredHutch/docker-kraken2Kraken2 with reference database
Dockerfile UpdatedFeb 27, 2019 -
swarm Public
Forked from NIH-HPC/swarmSwarm is a script designed to simplify submitting a group of commands to the Biowulf cluster.
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SignatureAnalyzer-GPU Public
Forked from broadinstitute/SignatureAnalyzer-GPUSignatureAnalyzer-GPU provides a Tensorflow implementation of automatic relevance determination non-negative matrix factorization (ARD NMF).
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 14, 2019 -
gram Public
Parse, manipulate, and emit GRAM (graph read alignment/map format)
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check-sex Public
Determine the biological sex of a human whole-genome BAM file
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cookiecutter-cms Public
Forked from MolSSI/cookiecutter-cmsPython-centric Cookiecutter for Molecular Computational Chemistry Packages
Python MIT License UpdatedFeb 1, 2019 -
modimizer Public
Forked from richarddurbin/modimizera toolset for fast DNA read set matching and assembly using a new type of reduced kmer
C UpdatedFeb 1, 2019 -
sparsepp Public
Forked from greg7mdp/sparseppA fast, memory efficient hash map for C++
C++ Other UpdatedDec 13, 2018 -
rkmh_paper_response Public
Code for running simulations for the RKMH paper review response
Shell UpdatedNov 30, 2018 -
simple_mutator Public
A script for introducing mutations in a reference genome at specific rates.
Python MIT License UpdatedNov 29, 2018 -
seqwish Public
Forked from pangenome/seqwishalignment to variation graph inducer
C++ MIT License UpdatedNov 29, 2018 -
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cacao Public
Forked from sigven/cacaoCallable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
R MIT License UpdatedOct 22, 2018 -
firecloud-tools Public
Dockerfiles and WDL descriptions for various tools on Broad FireCloud
WDL UpdatedOct 20, 2018 -
Filter of Pairwise Alignement
Rust MIT License UpdatedOct 16, 2018 -
smoove Public
Forked from brentp/smoovestructural variant calling and genotyping with existing tools, but, smoothly.
Go Apache License 2.0 UpdatedOct 15, 2018 -
manubot-rootstock Public
Forked from manubot/rootstockClone me to create your manuscript
CSS Other UpdatedOct 9, 2018 -
SVanalyzer Public
Forked from nhansen/SVanalyzerTools for the analysis of structural variation in genomes
Perl Other UpdatedOct 2, 2018 -
paragraph Public
Forked from Illumina/paragraphGraph realignment tools for structural variants
C++ Other UpdatedSep 18, 2018 -
BreaKmer Public
Forked from ccgd-profile/BreaKmerA method to identify structural variation from sequencing data in target regions
Python MIT License UpdatedAug 24, 2018 -
rbread Public
Forked from ocxtal/rbreadHeader-only, gzread-like reader for gzip, bz2, and xz.
C UpdatedAug 8, 2018 -
cxxopts Public
Forked from jarro2783/cxxoptsLightweight C++ command line option parser
C++ MIT License UpdatedAug 6, 2018
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