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Eigent: The Open Source Cowork Desktop to Unlock Your Exceptional Productivity.
Repository for the BioCLIP 2 model project. [NeurIPS'25 Spotlight] BioCLIP 2 is a biological foundation model trained on TreeOfLife-200M. Despite the narrow training objective, BioCLIP 2 yields ext…
Free-Text Promptable Universal 3D Medical Image Segmentation
Experiments related to finding the source of tiling artifacts in the segmentation pipelines based on the sliding window inference
A workshop for 3D image segmentation with Depp Learning models.
Ready-to-run Docker images for sequencing analysis
The Open Data Editor (ODE) is a no-code application to explore and validate tabular data in a simple way. Forever free and open source project powered by the Frictionless Framework.
Hugo based website with markdown + reveal slides for a workshop
A Probably Private mini-course introducing AI/ML security via interactive videos and hands-on examples.
Programm to create folderstructures and metadata files (like .json ...) based on templates
Program and links to the material for the GloBIAS Training School 2025, Kobe, Japan.
A Python package implementing the DALIA Interchange Format (DIF) for open educational resources (OERs)
Supporting python library for "Deep Learning for Biology".
MI-Lab exercise which deals with REST-Services using BAHMNI
🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Perfect for automating microscopy workflows and building intell…
git-bob uses AI to solve Github-issues. It runs inside the Github CI, no need to install anything on your computer.
Contains material for the 2025 EMBO Practical course "Advanced methods in bioimage analysis" https://www.embl.org/about/info/course-and-conference-office/events/bia25-01/
Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more