🎹 Play and display MIDI files on the web

A JupyterLab extension supporting Claude Code, Copilot, Ollama, and OpenAI-compatible LLMs, with MCP, skills, plugins, and notebook agents.

The hacker's browser.

CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.

🪨 why use many token when few token do trick — Claude Code skill that cuts 65% of tokens by talking like caveman

🧬 gget enables efficient querying of genomic reference databases

A collection of awesome markdown editors & (pre)viewers for Linux, Apple OS X, Microsoft Windows, the World Wide Web & more

AI-powered code assistant for Vim. OpenAI and ChatGPT plugin for Vim and Neovim.

Collections of package recipes for Pyodide

Web form to reprocess QuantStudio 5 qPCR results with user-supplied labels

Adding extended functionality to IsoTools2

A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

Compression-based k-nearest neighbors classifier for biological sequence classification

Markov Clustering in Python

A genome diagram generator for microbes and organelles

Querying genomes for evidence of Programmed DNA Elimination

Turn GitHub into an RSS reader

Logan Unitigs and Contigs

A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA)

Reference-quality genome reconstruction from complex metagenomes (or bacterial isolates) using only Nanopore long reads or both long and short reads (hybrid strategy)

Dot: An interactive dot plot viewer for comparative genomics

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

Draw UpSet plots with Matplotlib

A program for the Maximum-likelihood analysis of population genomic data.

Strelka2 germline and somatic small variant caller

An awesome list of workflow systems

Scripts and notes for singularity containers used for bioinformatics analyses