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15 stars written in Java
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RStudio is an integrated development environment (IDE) for R

Java 4,944 1,154 Updated Feb 6, 2026

Official code repository for GATK versions 4 and up

Java 1,904 622 Updated Feb 6, 2026

A cross-platform GUI and CLI app for automatically saving SHSH blobs

Java 1,901 167 Updated Oct 6, 2025

cBioPortal for Cancer Genomics

Java 944 799 Updated Feb 3, 2026

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

Java 715 402 Updated Feb 1, 2026

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java 279 73 Updated May 21, 2025

Various algorithms for analysing genomics data

Java 263 65 Updated Feb 6, 2026

A Tool to Annotate and Prioritize Exome Variants

Java 239 60 Updated Feb 5, 2026

New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support

Java 167 44 Updated Jul 30, 2025

VarDict Java port

Java 138 56 Updated Jan 5, 2024

Network Reverse Engineering through AP inference of Mutual Information

Java 87 27 Updated Mar 6, 2023

A project for exploring differentially active signaling paths related to proteomics datasets

Java 45 11 Updated Jul 30, 2025

Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological…

Java 38 13 Updated Mar 10, 2025
Java 17 5 Updated Nov 5, 2025

Automatically exported from code.google.com/p/mutex

Java 11 5 Updated Sep 22, 2022