NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities is available in sourceforge (https://sourceforge.net/p/ngsep…

A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.

Synteny Mapping and Analysis Program

JAVA source code to implement the ABC-DL approach described in Mondal et al

A small utility to rescue reconstructed ancestral sequences from BEAST analyses