ONT genome assemble

Example data for the official Snakemake tutorial

Mumemto: multi-MUM and MEM finding across pangenomes

A Graph-Based Variome Uncovers the Genetic Architecture of Pigs and Advances Genotype-to-Phenotype Mapping

AlphaFold 3 inference pipeline.

A list of software for pangenomics

A simple program for evaluate the assembly of a give genome.

Produce parallel coordinate plot from pandas dataframe with respect to any value not just class

Model-free inference of tree sequences from unphased genotypes

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

This study benchamrked the performance of existing cell deconvolution methods with human brain transcriptome and evaluated the biological applications of deconvoluted data in eQTL mapping and diffe…

typora-0.11.18 (last free version)

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

tomato graph pangenome

ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposable elements (TEs) in the human genome using next-generation s…

Add zoomed inset panels to your ggplot maps

Scripts to analyze iTracer data

A tutorial for pathway visualization using tidyverse, igraph, and ggraph

R scripts for image ploting

Detecting NUMTs from WGS

Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.

Multi-level visualization of genomic statistical variables on rectangular chromosomes

Any Way to Show Multi genomic Synteny

Personal data visualization side projects.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

ggpie - A ggplot2 extension to create pie, donut and rose pie plot

High dimensional weighted gene co-expression network analysis