Stars
AlphaFold 3 inference pipeline.
Python library to facilitate genome assembly, annotation, and comparative genomics
Plot structural variant signals from many BAMs and CRAMs
Tools for fast and flexible genome assembly scaffolding and improvement
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau
SALSA: A tool to scaffold long read assemblies with Hi-C data
Chromosome-level scaffolding using multiple references
FAN-C: Framework for the ANalysis of C-like data
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
Highly customizable, ambiguity-aware dotplots for visual sequence analyses
A tool to extract and visualize the results of CAFE (Computational Analysis of gene Family Evolution)
A pipeline that accepts a VCF file to run through Admixture
Scripts to calculate population genetics statistics
Infer demographic history with the Moran model
scripts for the project of seven thaliana genomes assembly
Scrapping tool for GISAID data regarding SARS-CoV-2
Solutions to problems from http://rosalind.info/
A collection of usefull tools for RAD or GBS data analysis
showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.
KOBAS: a command line tool for identifying significant pathways from genomic data
Find nodes in hierarchical clustering that are statistically significant