Stars
A short introduction to processing and assembly of short (Illumina) NGS sequencing data
Command-line program to download videos from YouTube.com and other video sites
A natural language interface for computers
An interactive and integrated web-based tool for comparing gene lists
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Code, unit tests, and tutorials for running PICRUSt2
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
A short introduction to using Docker in Bioinformatics
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
A toolbox for pangenome analysis and threshold evaluation.
The Microbiome Interpretable Temporal Rule Engine
Nextflow pipeline script, config and ancillary files for PHW PenGU sequencing
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
a signal-level demultiplexer for Oxford Nanopore reads
FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioin…
A Python program which parses city data and Google location history files (in JSON), interpolates data point between flights and train rides, projects the data points onto a Mercator map, and then …
Cloud-native genomic dataframes and batch computing
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
Torch implementation of neural style algorithm
Python module for the easy handling and analysis of DNase-seq data
ChIP-seq analysis notes from Ming Tang