OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

A faster lmm for GWAS. Supports GPU backend.

Tools for working with SAM/BAM data

GeneNetwork gemini threads issue tracker and kanban board

Guix configuration for GeneNetwork machines

Lightweight, fully-featured, idiomatic cross-platform Zig bindings to Lightning Memory-Mapped Database (LMDB).

Concise Common Workflow Language

Build your project.

Ruby & C implementation of Jaro-Winkler distance algorithm which supports UTF-8 string.

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

Git with a cup of tea! Painless self-hosted all-in-one software development service, including Git hosting, code review, team collaboration, package registry and CI/CD

Fetch info from public feeds

Tools for reading R/qtl2 genotype data file and calculating Kinship matrix for it.

Rust implementation of Flavia95's GFAtoVCF

Rust implementation of VG handle graph

GFA parser in Rust

Multi-GPU CUDA stress test

Julia implementation of Factored Spectrally Transformed Linear Mixed Models

guix packages for bioinformatics software

Population genetics analysis on VG

Workflows for viral analysis (as part of COVID-19 Biohackathon)

Now part of https://github.com/arvados/bh20-seq-resource ; available at http://covid-19.genenetwork.org/

COVID-19 Biohackathon April 5-11 2020

COVID-19 Biohackathon April 5-11 2020

exploring viral genome assembly with variation graph tools

This repository is meant for the participants of the BioHackathon hosted in Paris in Nov 2019 to share ideas, create issues, manage projects, publish materials, create code, etc.

This project is trying to solve how we (the public) collect, analyze and in total: manage data collected from climate in the world.