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nf-core / rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 1,193 842 Updated Feb 5, 2026

nextflow-io / patterns

A curated collection of Nextflow implementation patterns

Nextflow 367 73 Updated Nov 21, 2023

vib-tcp / nextflow-workshop

Nextflow workshop materials November 2024

Nextflow 18 14 Updated Dec 19, 2025