Apache Arrow is the universal columnar format and multi-language toolbox for fast data interchange and in-memory analytics

Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoCycler / MACSima / etc)

Documentation that simply works

Simple tool for clustering spatial points with categorical labels.

Uniform Manifold Approximation and Projection

Public repository for Agent Skills

Fast, sensitive and accurate integration of single-cell data with Harmony

KeePassXC is a cross-platform community-driven port of the Windows application “KeePass Password Safe”.

R SDK for interacting with Microsoft 365 APIs

Parallel computing with task scheduling

rapids_singlecell: GPU-accelerated framework for scRNA analysis

https://sparrow-pipeline.readthedocs.io/en/latest/

A dependency-free large (+2500) collection of colormaps and palettes for Python 🎨

🔬 MCP server for AI-powered napari control. Connect Claude, ChatGPT, Cursor, and other LLMs to napari for interactive image analysis. Perfect for automating microscopy workflows and building intell…

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

SSAM (Spot-based Spatial cell-type Analysis by Multidimensional mRNA density estimation)

Pin, discover, and share resources

Welcome to a calmer internet

Package for the analysis of Transcripts outside segmented cells in ST data

🌡️💧 live reload for plumber APIs

Easy and Powerful Webservers in R

A Grammar of Graphics for Python

An open and interoperable data framework for spatial omics data

Static plotting for spatialdata

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Vitessce is a visual integration tool for exploration of spatial single-cell experiments.