Easy interactive web applications with R

R's data.table package extends data.frame:

An interactive graphing library for R

R toolkit for single cell genomics

Function-oriented Make-like declarative workflows for R

🚀 R package: future: Unified Parallel and Distributed Processing in R for Everyone

Write reusable, composable and modular R code

A list of scRNA-seq analysis tools

ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

Inferring CNV from Single-Cell RNA-Seq

Fast, sensitive and accurate integration of single-cell data with Harmony

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

Low-level API for programming with R

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

S7: a new OO system for R

High dimensional weighted gene co-expression network analysis

Fast Gene Set Enrichment Analysis

R package for integrating and analyzing multiple single-cell datasets

R SDK for interacting with Microsoft 365 APIs

Community-provided extensions to Seurat

Spatial omics analysis toolbox

Pin, discover, and share resources

Build high quality, enterprise-grade Shiny apps at speed

Minimalist Async Evaluation Framework for R

Template R package with rust bindings

R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.

Gene set variation analysis