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FDA-LLMS-RAG Public
Data for analysis of various LLMs with and without RAG for parsing FDA guidance documents relating to laboratory testing
MIT License UpdatedDec 5, 2024 -
VAPiD Public
VAPiD: Viral Annotation and Identification Pipeline
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CLOMP-1 Public
Forked from FredHutch/CLOMPUW Virology's Clinically OK Metagenomic Pipeline
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frequency-scanner Public
Reports frequency of all single nucleotide changes for a group of fastq files
next-generation-sequencing metagenomics transitions mutation-analysis fastq-anaysis mutation-rate transversionsPython GNU General Public License v3.0 UpdatedJan 13, 2020 -
CLOMP Public
🐴 CLinically Okay Metagenomic Pipeline 🐴
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viral-bioinformatics-scripts Public
One happy home for all my random and one off viral bioinformatics scrips
Python MIT License UpdatedJun 7, 2019 -
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snap Public
Forked from amplab/snapScalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
C++ Apache License 2.0 UpdatedMar 1, 2019 -
krakenuniq Public
Forked from fbreitwieser/krakenuniq🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
C++ GNU General Public License v3.0 UpdatedJan 8, 2019 -
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VirusDiscoveryProject Public
Forked from NCBI-Hackathons/VirusDiscoveryProjectSoftware, architecture, and data index design for the 2018/2019 Virus Discovery Project
Jupyter Notebook MIT License UpdatedDec 13, 2018 -
idseq-dag Public
Forked from chanzuckerberg/czid-dagPipeline engine for IDseq (Infectious Disease Sequencing Platform)
Python MIT License UpdatedNov 21, 2018 -
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pymol-open-source Public
Forked from schrodinger/pymol-open-sourceOpen-source foundation of the user-sponsored PyMOL molecular visualization system.
C Other UpdatedSep 25, 2018 -
Speaker-Tracking Public
Speaker Tracking Pipeline in python and linux - based off audio tracking in python package here on github
Python UpdatedSep 8, 2018 -
Scripts Public
Scripts from my time at UWIN - Use with caution. Also shoutout to kaldi b/c I uploaded my modified run.sh files and some stuff
Shell UpdatedSep 8, 2018 -
NovelVirusSeq Public
Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products
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khmer Public
Forked from dib-lab/khmerIn-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Python Other UpdatedAug 26, 2016 -
hypernym-analysis- Public
Scripts for looking at word and hypernym frequency of text using python and NLTK
Python UpdatedNov 20, 2015
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