A pure Unix shell script ACME client for SSL / TLS certificate automation

Claude Code superpowers: core skills library

A conda-forge distribution.

Conda recipes for the bioconda channel.

Tetris in sed

the pangenome graph builder

genome_updater is a bash script that downloads and updates (non-redundant) snapshots of the NCBI Genomes repository (RefSeq/GenBank) with advanced filters, detailed logs and reports, file integrity…

Example genomics data for tool developers

BEAV: Bacterial Element Annotation reVamped

An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and outputs the edited (cleaned) fastq file that can safely be …

A simple auto-updating systemd unit to run Portainer

Infrastructure as code implementation of the seqeralabs/showcase on Seqera

The gxy.io link shortening service

Subtyping of Francisella tularensis subtypes

Oxford Nanopore Technologies (ONT) long-read assembly polishing tool

Automatically and reproducibly runs Autocycler (v. 0.4.0) with additional long-read QC, assembly reorientation, and optional short-read QC and polishing.

Rapid Streptococcus suis Serotyping on Nanopore Sequencing Data

Whole genome sequencing of Pandoraea apista using Oxford Nanopore MinION