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@staphopia @Read-Lab-Confederation @conda-forge @bioconda @MetaSUB @bactopia

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39 stars written in Rust
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A refreshingly simple data-driven game engine built in Rust

Rust 45,794 4,533 Updated Apr 29, 2026

🤖 Just a command runner

Rust 33,224 770 Updated Apr 28, 2026

Fast, small, and fully autonomous AI personal assistant infrastructure, ANY OS, ANY PLATFORM — deploy anywhere, swap anything 🦀

Rust 30,764 4,496 Updated Apr 28, 2026

Fast, collaborative live terminal sharing over the web

Rust 7,449 282 Updated Jun 19, 2025

Painless compression and decompression in the terminal

Rust 3,528 126 Updated Apr 29, 2026

An AI agent for teams, communities, and multi-user environments.

Rust 2,160 333 Updated Apr 23, 2026

CLI search and replace | Space Age seD

Rust 2,026 28 Updated Sep 30, 2025

Publish Rust crates from CI with a Release PR.

Rust 1,358 161 Updated Apr 25, 2026

Blazingly fast terminal recorder that generates animated gif images for the web written in rust

Rust 1,230 35 Updated Mar 2, 2026

A tool to create visual HTML reports from collections of CSV/TSV tables

Rust 675 40 Updated Apr 27, 2026

Rust crates to work with the Conda ecosystem.

Rust 428 194 Updated Apr 28, 2026

Secure, distributed, append-only log

Rust 353 36 Updated Feb 18, 2026

ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.

Rust 301 18 Updated Feb 3, 2026

Randomly subsample sequencing reads or alignments

Rust 260 20 Updated Apr 28, 2026
Rust 248 17 Updated Apr 1, 2026

Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.

Rust 249 14 Updated Oct 12, 2025

Command line scientific data management tool

Rust 231 10 Updated Nov 4, 2024

A pairwise sequence aligner written in Rust

Rust 153 14 Updated Jan 27, 2026

Minimal but speedy quality control for nanopore reads in Rust 🐻

Rust 139 9 Updated Sep 16, 2024

Split k-mer analysis – version 2

Rust 105 9 Updated Apr 9, 2026

expressions on VCFs

Rust 91 3 Updated Mar 17, 2026

Genome size estimation from long read overlaps

Rust 85 4 Updated Apr 13, 2026

👷 Fasten toolkit, for streaming operations on fastq files

Rust 82 7 Updated Oct 24, 2025

Simple and transparent support for compressed files.

Rust 81 8 Updated Feb 27, 2026

a tool to filter sites in a FASTA-format whole-genome pseudo-alignment

Rust 65 2 Updated Jun 16, 2025

alignment-free coverage calculation for metagenomic binning >100 times faster

Rust 50 2 Updated Mar 13, 2025

Remove human reads from a sequencing run

Rust 48 4 Updated Apr 27, 2026

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

Rust 45 3 Updated Apr 11, 2026

Rust-based sra-tools

Rust 42 3 Updated Apr 28, 2026

PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.

Rust 29 2 Updated Aug 20, 2025
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