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Git Source Code Mirror - This is a publish-only repository but pull requests can be turned into patches to the mailing list via GitGitGadget (https://gitgitgadget.github.io/). Please follow Documen…
NVIDIA Linux open GPU kernel module source
ImageMagick is a free, open-source software suite for creating, editing, converting, and displaying images. It supports 200+ formats and offers powerful command-line tools and APIs for automation, …
Samples for CUDA Developers which demonstrates features in CUDA Toolkit
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Tools (written in C using htslib) for manipulating next-generation sequencing data
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression
bedtools - the swiss army knife for genome arithmetic
De novo assembler for single molecule sequencing reads using repeat graphs
C library for high-throughput sequencing data formats
This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. This is a comprehensive upd…
CUDA by Example, written by two senior members of the CUDA software platform team, shows programmers how to employ this new technology. The authors introduce each area of CUDA development through w…
Fast and accurate de novo assembler for long reads
lumpy: a general probabilistic framework for structural variant discovery