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33 stars written in R
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An implementation of the Grammar of Graphics in R

R 6,912 2,130 Updated Mar 29, 2026

R for data science: a book

R 5,028 4,409 Updated Apr 8, 2026

dplyr: A grammar of data manipulation

R 5,023 2,135 Updated Apr 7, 2026

R's data.table package extends data.frame:

R 3,867 1,043 Updated Apr 9, 2026

R toolkit for single cell genomics

R 2,698 988 Updated Apr 9, 2026

An interactive graphing library for R

R 2,665 640 Updated Apr 1, 2026

Tools to make an R developer's life easier

R 2,506 762 Updated Mar 18, 2026

Easily install and load packages from the tidyverse

R 1,784 293 Updated Jun 18, 2025

๐Ÿ“Š A universal enrichment tool for interpreting omics data

R 1,195 266 Updated Apr 5, 2026

Circular visualization in R

R 1,011 149 Updated Nov 11, 2023

Building R packages

R 942 641 Updated Apr 10, 2026

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

R 777 169 Updated Jan 6, 2024

๐Ÿ“Š Circular and Rectangular Manhattan Plot

R 630 121 Updated Feb 25, 2026

R package for detecting doublets in single-cell RNA sequencing data

R 540 126 Updated Mar 21, 2025

Differential expression of RNA-seq data using the Negative Binomial

R 455 107 Updated Mar 12, 2026

๐ŸŒˆ Interactive analysis of metagenomics data

R 447 80 Updated Sep 17, 2025

One-step to Cluster and Visualize Gene Expression Matrix

R 365 35 Updated Mar 7, 2026

๐Ÿ“ฎ A Memory-efficient, Visualization-enhanced, and Parallel-accelerated Tool For Genome-Wide Association Study

R 326 76 Updated Mar 11, 2026

R Graphics Cookbook

R 319 192 Updated Mar 4, 2025

R package to integrate rdocumentation.org into your R workflow

R 213 126 Updated Aug 22, 2024

R package for analyzing single-cell RNA-seq data

R 179 66 Updated Feb 29, 2024

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

R 159 70 Updated Feb 12, 2026

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

R 148 55 Updated Aug 30, 2021

Reference-free profiling of polyploid genomes

R 144 23 Updated Oct 2, 2025

Microsatellite instability (MSI) detection for tumor only data.

R 114 23 Updated Apr 23, 2024

Lima - Demultiplex Barcoded PacBio Samples

R 68 24 Updated May 8, 2025

for those times you want to make plots with candy-themed color schemes

R 59 18 Updated Mar 30, 2020

Reactome Pathway Analysis

R 45 10 Updated Dec 23, 2025

Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.

R 32 1 Updated Jul 2, 2020
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