Stack trace visualizer

ggplot2: elegant graphics for data analysis

⚡ ♒ Rapid prokaryotic genome annotation

Trinity RNA-Seq de novo transcriptome assembly

Automatically exported from code.google.com/p/cdhit

The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

TransDecoder source

STAR-Fusion codebase

VarDict

Plugins for the Ensembl Variant Effect Predictor (VEP)

Learning the Variant Call Format

Learning the Sequence Alignment/Map format

Long-read metagenomic analysis

Few scripts facilitating the extraction of info from Repeat Masker .out files

phenotype-based prioritization of candidate genes for human diseases

FusionInspector code

📈 Automatically optimise three of Velvet's assembly parameters.

Structural Variants Pipeline for Long Reads

Fork of the Polysolver project

Prioritize structural variants based on CADD scores

novoBreak: local assembly for breakpoint detection in cancer genomes

Evaluation of phasing performance

A pipeline for isoseq

Annotate genomics variations of hg19 by using a BED format database, which construct from NCBI annotation release 104

Latest MOCAT2 version

iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient