Skip to content
View sen1019san's full-sized avatar

Block or report sen1019san

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Starred repositories

26 results for source starred repositories written in Java
Clear filter

Zotero plugin to manage your attachments: automatically rename, move, and attach PDFs (or other files) to Zotero items, sync PDFs from your Zotero library to your (mobile) PDF reader (e.g. an iPad,…

Java 4,262 293 Updated Apr 16, 2024

A quality control analysis tool for high throughput sequencing data

Java 548 101 Updated Nov 3, 2025

Java utilities for Bioinformatics

Java 511 134 Updated Oct 15, 2025

RTG Tools: Utilities for accurate VCF comparison and manipulation

Java 328 52 Updated May 27, 2025

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Java 277 73 Updated May 21, 2025

Visualization and analysis software for Hi-C data -

Java 276 61 Updated Aug 6, 2024

Accurate Species TRee ALgorithm

Java 266 68 Updated Apr 1, 2024

Jasmine: SV Merging Across Samples

Java 229 19 Updated Dec 20, 2024

NLR-Annotator upload

Java 73 25 Updated Jul 19, 2023

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

Java 67 20 Updated Aug 16, 2023

Posterior summarisation in Bayesian phylogenetics

Java 66 17 Updated Sep 27, 2025

Code for phasing SVs with SNPs

Java 52 3 Updated Mar 27, 2020

The hap-ibd program detects identity-by-descent segments in phased genotype data.

Java 48 10 Updated Jun 11, 2024

Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

Java 38 4 Updated Jun 28, 2024

A module for improving the insertion sequences of structural variant calls

Java 32 6 Updated Jul 14, 2021

A genome alignment and visualization system

Java 31 7 Updated Nov 15, 2020

PanTools

Java 30 13 Updated May 7, 2019

For all your cluster needs

Java 17 3 Updated Feb 3, 2023

Annotation Pipeline for NLR genes

Java 16 9 Updated Dec 6, 2018

Taxa Insertion by Parsimony

Java 15 1 Updated Jan 22, 2025
Java 13 6 Updated Sep 14, 2022

personal genome constructor

Java 9 11 Updated May 29, 2025
Java 6 2 Updated Sep 29, 2022

The source codes of the eGPS 2.1

Java 4 1 Updated Aug 7, 2025
Java 3 Updated Jan 15, 2019

GATK Genome Strip Repository

Java 3 1 Updated Jun 14, 2023