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GUI/CommandLine Tool Box for biologistists to utilize NGS data.
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
VGP repository for the genome assembly working group
A simple Snakemake profile for Slurm without --cluster-config
DNA sequencing analysis notes from Ming Tang
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
A pipeline to generate a phylogenetic tree from huge SNP data
MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
r package for post-clustering curation of amplicon next generation sequencing data (metabarcoding)
Workflow for Building Microsynteny Networks
Pipeline for structural variant image curation and analysis.
Repository for bioinformatics training at the Norwegian Veterinary Institute
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated wi…
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
Bash scripts and data used in pantranscriptomic paper
Structure variants calling and genotyping scripts for pan-Zea
This repository contains all codes and scripts used in the Wild Rice Pangenome Project. The project aims to provide a comprehensive analysis of a pangenome reference of wild and cultivated rice. Be…