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Everything you need to know to get the job.
MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville
RStudio is an integrated development environment (IDE) for R
Deep Learning (Python, C, C++, Java, Scala, Go)
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Implementations of a data structure with false negatives but no false positives.
Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
Bio4j abstract model and general entry point to the project
TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various us…
RDP extensible sequence classifier for fungal lsu, bacterial and archaeal 16s
Work collaboratively in IUCN Red List assessments and manage online biodiversity databases, including a graph-based taxonomy system, species traits and habitats, and species occurrences.
Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
do multiple nucleotide sequence alignment fast and accurately
Analyzing sketching and sampling approaches for fast and accurate read classification