Statistical computation library for Rust

Rust implementation of ntHash rolling‑hash suite, focused on contiguous k‑mer hashing for DNA sequences.

Build phylogenomic datasets in seconds.

Counting occurrences of a given byte or UTF-8 characters in a slice of memory – fast

Ultra-rapid detection of viral variants directly from sequencing data

A small, auxiliary index to massively improve parallel fastq parsing

Recipes for avoiding bounds checks in Rust, without unsafe!

FASTA and FASTQ parsing in Rust

Python and Rust library for loading, saving, and manipulating taxonomic trees

Learn and Practice the Rust programming language the effective way.

Ensure NEON or AVX2 is available during compilation.

Comfortably monitor your Internet traffic 🕵️‍♂️

Rust Atomics and Locks （中文翻译）

《Effective Go》中英双语版

Code for Command-Line Rust (O'Reilly, 2024, ISBN 9781098109417)

Vector graphics in Go

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

RepGenR (Representative-Genome Repositories) clusters genome sequences based on average nucleotide identity to produce flexible databases

A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.

A multiscale pangenome browser

Predict the function of phage hypothetical proteins using an LSTM model trained with Phage Synteny

Benchmark data structures for kmer sets.

A pipeline for running AMRfinderPlus and collating results into functional classes

Ultrafast identification of signature sequences in microbial genomes

Overview of our data for microbial genomic benchmarking

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

A general technique to reduce memory consumption and improve the performance of gap-affine and dual gap-affine sequence alignment algorithms