16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
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Jul 19, 2021 - R
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16s
Here are 32 public repositories matching this topic...
Various functions for analysis of microbial community data
microbial-communities microbiome 16s microbiome-analysis microbial-ecology amplicon-sequencing null-model
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Oct 1, 2025 - R
accessory functions for processing microbial community data
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Dec 24, 2022 - R
Compare different differential abundance and expression methods
metagenomics rnaseq auc proteomics metabolomics microbiome false-positive-control differential-expression 16s otu marker-gene-analysis relative-abundances compare-methods differential-abundance-methods
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Mar 8, 2022 - R
Mothur procedures for 16S and ITS analysis
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Apr 14, 2022 - R
The is mostly a wrapper tool using phyloseq and microbiome R packages.
sequencing metagenomics microbial-communities microbiome amplicon 16s microbiome-analysis core-microbiome qc-pipeline
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Nov 23, 2022 - R
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
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Jul 19, 2021 - R
code to reproduce AIH results
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May 2, 2018 - R
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Feb 5, 2020 - R
🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
workflow pipeline slurm microbiome 16s microbiome-analysis dada2 amplicon-sequencing performance-cluster
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Jun 29, 2018 - R
Analysis scripts for Gortzia yakutica paper
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Jul 24, 2020 - R
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
diversity rstudio beta beta-diversity microbiome 16s microbiome-analysis phyloseq alpha-diversity microbiome-workflow metagenomic-pipeline shinny
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Mar 6, 2024 - R
Rsearch: An R Interface to VSEARCH supporting visualization and parameter tuning
bioinformatics pipeline clustering fasta fastq metabarcoding amplicon 16s denoising otu vsearch sintax metabarcoding-pipeline unoise
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Mar 24, 2026 - R
Periodontitis pathogen Porphyromonas gingivalis promotes pancreatic tumorigenesis via neutrophil elastase from tumor-associated neutrophils
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Jun 25, 2025 - R
Metabarcoding and 16S rRNA Gene Sequencing (BIOF-Mic101)
statistical-analysis microbiome metabarcoding 16s microbiome-analysis dada2 microbiome-data metaanalysis
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Apr 8, 2025 - R
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