This repostory houses microbiomestar, a tool for creating star plot figures from compositional taxonomic phyloseq objects and other data frames.
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Apr 1, 2026 - R
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16s
Here are 33 public repositories matching this topic...
Rsearch: An R Interface to VSEARCH supporting visualization and parameter tuning
bioinformatics pipeline clustering fasta fastq metabarcoding amplicon 16s denoising otu vsearch sintax metabarcoding-pipeline unoise
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Mar 31, 2026 - R
Manuscript and research materials for "Environmental and developmental drivers of blow fly (Diptera: Calliphoridae) microbiome succession"
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Mar 26, 2026 - R
16S sequencing analysis pipeline for low biomass samples
machine-learning bioinformatics r reproducible-research metagenomics rstats data-analysis beta-diversity microbial-communities microbiome 16s microbiota phyloseq dada2 amplicon-sequencing low-biomass alpha-diversity 16s-rrna differential-abundance-analysis spls-da
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Mar 3, 2026 - R
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
pipeline metagenomics illumina 16s microbiota illumina-sequencing phyloseq microbial-ecology dada2 16s-seq
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Apr 2, 2026 - R
Various functions for analysis of microbial community data
microbial-communities microbiome 16s microbiome-analysis microbial-ecology amplicon-sequencing null-model
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Oct 1, 2025 - R
Periodontitis pathogen Porphyromonas gingivalis promotes pancreatic tumorigenesis via neutrophil elastase from tumor-associated neutrophils
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Jun 25, 2025 - R
Metabarcoding and 16S rRNA Gene Sequencing (BIOF-Mic101)
statistical-analysis microbiome metabarcoding 16s microbiome-analysis dada2 microbiome-data metaanalysis
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Apr 8, 2025 - R
The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.
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Apr 1, 2024 - R
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
diversity rstudio beta beta-diversity microbiome 16s microbiome-analysis phyloseq alpha-diversity microbiome-workflow metagenomic-pipeline shinny
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Mar 6, 2024 - R
Outlines the process of testing for statistical differences in certain taxa by group utilizing the phyloseq, tidyverse, and various statistical packages within R.
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Nov 10, 2023 - R
Meta16s - an all-in-one solution for streamlined 16s analyses
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Aug 12, 2023 - R
accessory functions for processing microbial community data
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Dec 24, 2022 - R
The is mostly a wrapper tool using phyloseq and microbiome R packages.
sequencing metagenomics microbial-communities microbiome amplicon 16s microbiome-analysis core-microbiome qc-pipeline
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Nov 23, 2022 - R
Mothur procedures for 16S and ITS analysis
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Apr 14, 2022 - R
Compare different differential abundance and expression methods
metagenomics rnaseq auc proteomics metabolomics microbiome false-positive-control differential-expression 16s otu marker-gene-analysis relative-abundances compare-methods differential-abundance-methods
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Mar 8, 2022 - R
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