nyankomicro is a in-house package that aims to make the plots more beautiful.

Metabarcoding and 16S rRNA Gene Sequencing (BIOF-Mic101)

Periodontitis pathogen Porphyromonas gingivalis promotes pancreatic tumorigenesis via neutrophil elastase from tumor-associated neutrophils

Analyses Pros-RODAM microbiota data

Manuscript and research materials for "Environmental and developmental drivers of blow fly (Diptera: Calliphoridae) microbiome succession"

Code that was used to generate figures for the Mahmoudi et al., 2013 publication

Microbiome Abundance Analysis

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Analysis of Salmo trutta gametes and embryo microbiome project in Vals/Trun, Switzerland

Meta16s - an all-in-one solution for streamlined 16s analyses

This repostory houses microbiomestar, a tool for creating star plot figures from compositional taxonomic phyloseq objects and other data frames.

MGSAT semi-automated differential abundance analysis of omics datasets

A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.

A nextflow pipeline for the analysis of 16S amplicon data built around RExMap

The purpose of this repository is to store R scripts that were used for 16S community compositional analyses.

Outlines the process of testing for statistical differences in certain taxa by group utilizing the phyloseq, tidyverse, and various statistical packages within R.

16S sequencing analysis pipeline for low biomass samples

Analysis scripts for Gortzia yakutica paper

The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.