A Framework for IMS-MS Raw Data Processing written in Rust and Python.
Collisional cross-section prediction for modified and multiconformational peptides
The repository for Targeted Feature Detection and Extraction (TFD/E).
Python reader for Bruker timsTOF (.d) data: DDA/DIA/PRM, fast centroiding and noise filtering
prototype machine-learning solutions for high-throughput MS with ease
Fast, lazy mzML reader for Python: typed models, gzip random access, validation, Numpress/zstd decoding
Beta-DIA is a partially open-source, free-to-use Python software that provides comprehensive peptide/protein identification and accurate quantification results for single-shot diaPASEF data.
Extract MS/MS spectra from Bruker timsTOF .d folders and convert them to MS2, MGF, or mzML.
A GUI to convert Bruker Raw files (.d) to an .ms2 file format
Pure-Rust reader for Bruker timsTOF .tdf / .tdf_bin files, with Python bindings.
Denoise Bruker timsTOF .d files by keeping ion-mobility streaks (Rust CLI + library + GUI)
Cross-platform CLI/GUI for detecting DIA acquisition modes in mzML, mzXML, Bruker timsTOF, Thermo RAW, and SCIEX WIFF data.
Fast, memory-efficient MS1 feature detection for LC-MS data (mzML, Thermo RAW, Bruker timsTOF)
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