Computational Biology & Bioinformatics Resources
🩺 Assessing StringTie, Salmon, and Kallisto with simulated RNA-Seq reads with noises introduced in read- and annotation-level.
Common BASH routines for computational biology
A protocol for applying low-coverage whole-genome sequencing data in structure variation studies
A tailored identification framework to depict the landscape of transcribed conserved non-coding elements (TCNEs)
Machine learning and bioinformatic workflows for gene discovery.
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
Leukemia is a cancer of blood-forming tissues. For this reason, it is relevant to analyze the differences in gene expression for people affected by this disease, which is the purpose of this project.
Independent Research in Cell and Systems Biology I at the University of Toronto
This project studies the evolution of color polymorphism in the granular poison frog Oophaga granulifera
Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.
Data and scripts associated with H. limbata 2014 1st instar transcriptome
Workflow to comparative transcriptomics
SNU-seq data processing and analysis scripts
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