Beyond conflict: intragenomic conflict predicts individual variation in altruistic behaviour.

🧬 Cancer type and survival prediction based on transcriptomic feature map

Long-read RNA-seq nextflow pipeline for quantification, novel isoform discovery and quality control

singularity & snakemake workflow for trancriptomic analyses of Aechmea species.

De-novo Transcriptomics Assembly workflow for four Dictyostelium species (e.g.- Dictyostelium discoideum, Polysphondylium pallidum, Dictyostelium Lacteum and Dictyostelium Fasciculatum). This is the standard assembly workflow that should ideally work on any organism.Before normalizing first concatenate all RNAseq data across all samples into a s…

Platform that allows querying of mitochondrial-nuclear co-expression data, developed using Shiny

"Epidemiología y detección de biomarcadores en cáncer". Trabajo Fin de Máster del Máster Universitario Oficial en Ciencia de Datos e Ingeniería de Computadores de la Universidad de Granada.

Bioinformatics project analyzing cancer metabolism using computational modeling and analysis. The project was awarded the GIDI-UP: Summer Research Award and includes data, models, and scripts.

interface to geneformer

Transcriptomic analysis.

This study explores morph-specific differences in gene expression and steroid hormone metabolism in ruff sandpipers (Calidris pugnax), focusing on the key enzyme HSD17B2.

Leukemia is a cancer of blood-forming tissues. For this reason, it is relevant to analyze the differences in gene expression for people affected by this disease, which is the purpose of this project.

A python data science library to build and analyze biological networks from spatial transcriptomics data. Allows inclusion of spatial information into the networks, going a step beyond graphs derived from scRNA-seq techniques.

Example workflow of PCA-based method of comparing and visualizing differentiation progression (timing) between two groups of samples in bulk RNA-seq data. Specifically, this method allows the user to define the differentiation 'start' and 'end' points, which is helpful if the timing difference between groups occurs between specific timepoints.

Analysis pipeline for RatGTEx

Website (.NET Core MVC architecture) for the RytenLab team (https://rytenlab.com/). It also contains the specification for the .NET Core REST API of the RytenLab Team (https://rytenlab.com/swagger/index.html).

Blog summarizing most important codes I have written

Contains analysis for the lute software paper

Ahren Lab page