Pipeline designed to evalute FFPE processing kits through qc, variant calling, and truth set comparison analysis. Configured for AWS Batch deployment.
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Oct 3, 2025 - Nextflow
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wgs
Here are 10 public repositories matching this topic...
Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline 🧪🧬🖥️
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Dec 10, 2024 - Nextflow
A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.
assembly sequencing amr microbiology wgs oxford-nanopore illumina-sequencing long-reads hybrid-assembly antimicrobial-resistance short-reads
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Dec 12, 2025 - Nextflow
Nextflow pipeline for whole-genome sequencing (WGS) analysis and variant calling in bacterial genomes using Illumina data, supporting de novo assembly and reference-based analysis.
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Dec 16, 2025 - Nextflow
Bacterial Assembly and Antimicrobial Resistance Genes In NextFlow
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Dec 18, 2025 - Nextflow
Longread PacBio sequencing processing for WGS and PureTarget
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Dec 17, 2025 - Nextflow
Call and score variants from WGS/WES of rare disease patients.
workflow pipeline nextflow diagnostics variant-calling wgs snv wes variant-annotation structural-variants nf-core rare-disease
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Dec 18, 2025 - Nextflow
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