Monroe: A Molecular Foundation Model for In-Context Probabilistic Inference
A PubChemPy-inspired PUG REST client with throttle-aware retry, caching, BioAssay/gene/protein/Tox21 data, live cross-references into ChEMBL, BindingDB and the PDB, and a local parquet mirror for bulk CID lookups.
An R package for analyses of bioassays and probit graphs
Protocols for molecular biology, bioassays, metabolite analysis, etc.
This repository hosts the deep learning framework for a next-generation Digital Point-of-Care Testing (POCT) system.
Parse and standardize bioassay measurements: unit conversion to molar, pActivity computation, and data-quality flags.
PubChem — independent third-party profile of a public API surface, by API Evangelist. PubChem is NCBI's open chemistry database containing information on more than 100 million chemical compounds. It provides REST and view APIs for searching chemical structures, retrieving molecular properties, bioactivity data, safety information, and drug informat
Bioassay LOD Fitter is a web application built to analyse concentration-response data, perform advanced sigmoidal curve fitting, and rigorously calculate the Limit of Detection (LOD) for biological and chemical assays using validated statistical frameworks.
A small Shiny application designed specifically for the estimation of Knock-Down Time based on aggregated WHO or CDC bottle Bioassay data.
BPO: An application ontology for extending interoperability for in-vivo bioassay protocols relevant to antimicrobial resistance (AMR) drug discovery.
An open-source, local-first Model Context Protocol (MCP) server written in TypeScript for **Biopharma Software Infrastructure, FDA 21 CFR Part 11 GxP Audit Trailing, CDISC SDTM/Allotrope Data Exports, 4PL Dose-Response Curve Fitting, and HIPAA PII/PHI Redaction**.
Files for 3D printable WHO bioassay part system
Dose-response and IC50 analysis app with model comparison and publication-ready plots
Consultoria em análise de dados para Maria Carmem Andrade (TCC Farmácia UFF, 2017)
Are expression-matched populations comparable? A distribution-aware antigen-tail audit with explicit mathematics, synthetic examples, and a dark-mode browser interface.
Análise de dados Ana Claudia Duarte (Doutorado IOC, 2017)
Which nutrient feeds the coves? A DuckBot/OECD-221 duckweed bioassay pilot for Lake Wylie — protocol, NC/SC collaborator map, and a full errata of what we got wrong.
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