Spatial patterns in biodiversity change

Collate and clean bottom trawl survey data

Sequence processing and analysis code used to investigate the effects of different DNA extraction methods and PCR variability on multi-taxon DNA meta-barcoding estimates of soil biodiversity.

Code and data used for analysis and estimation of invertebrate biodiversity on a temperate forested island (Hauturu) based on DNA barcodes and soil DNA metabarcoding data.

Variability measures of DNA barcodes sequences (i.e. Intraspecific and Interespecific)

Code for Biodiversity Analysis in the Northern Andes and Southern Central America. Mainly in R

R library for the analysis of spatial biodiversity data. Including tools to estimate climate from species coexistence including CRACLE and Thompson's Mutual Climatic Range technique.

eDNA pipeline

My slides for my lecture on biodiversity, evolution and taxonomy for a short course for high school biology teachers, organised by the University of Cape Town's Schools Development Unit

👯 ☕ Where you lead, I will follow ☕ 👯

Code and data for the paper 'The biodiversity intactness index may underestimate losses' published in Nature Ecology and Evolution https://www.nature.com/articles/s41559-019-0895-1

Wrapper for BOLD API (+ barcode auditing)

Workshop introducing the supersmartR packages and pipeline

Click the website for more details ➡️

Codes I wrote for the paper : "Global determinants of freshwater and marine fish genetic diversity" Nature Communications, 2020

Phylogenetic Biodiversity Query Tools

WEGE: A NEW METRIC FOR RANKING LOCATIONS FOR BIODIVERSITY CONSERVATION

ANR project: Predictive scenarios of health in Southeast Asia: linking land use and climate changes to infectious diseases