Machine learning for NeuroImaging in Python
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Mar 24, 2026 - Python
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brain-connectivity
Here are 44 public repositories matching this topic...
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
python neuroscience spectrogram electrophysiology coherence frequency-domain brain-connectivity multitaper connectivity-measures canonical-coherence phase-lag-index spectral-granger-causality global-coherence
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Nov 7, 2025 - Python
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
workflow optimization networkx ensemble-learning networks fmri decision-trees nilearn fuzzy-logic multiverse brain-connectivity tractography nipype dipy gridsearch graph-neural-networks dmri ensemble-sampling
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Feb 1, 2024 - Python
Regression Graph Neural Network (regGNN) for cognitive score prediction.
regression brain-connectivity symmetric-positive-definite network-neuroscience riemannian-manifold graph-neural-networks gnn sample-selection cognitive-score matrix-parallel-transport geodesic-transport
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Apr 19, 2023 - Python
Python Machine Learning Toolbox for Brain Network Classification. Source codes are included of the top 20 teams in the Kaggle competition.
machine-learning machine-learning-algorithms feature-selection feature-extraction classification dimensionality-reduction data-processing brain-connectivity brain-networks brain-disorders
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Jun 2, 2020 - Python
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
machine-learning neural-networks neuroimaging simulations fmri brain-connectivity brainweb activity-flow
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Mar 17, 2025 - Python
How to fuse a population of graphs into a single one using graph neural networks?
machine-learning-algorithms network-analysis cbt brain-connectivity geometric-deep-learning brain-networks graph-neural-networks gnn network-integration network-fusion graph-fusion graph-integration brain-gnn atlas-learning
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Oct 24, 2023 - Python
Pythonic implementation of the Phase Transfer Entropy method using NumPy and SciPy
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Oct 31, 2024 - Python
MGN-Net: A novel Graph Neural Network for integrating heterogenous graph population derived from multiple sources.
data-integration brain-connectivity biological-networks data-fusion multigraph network-neuroscience brain-networks graph-neural-networks graph-normalizer multiview-networks graph-integration connectomes
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Jun 6, 2022 - Python
MultiGraphGAN for predicting multiple target graphs from a source graph using geometric deep learning.
generative-adversarial-network gan graph-generation brain-connectivity predictive-learning geometric-deep-learning multimodal-deep-learning multi-view-learning brain-graphs predictive-intelligence source-graph target-graph morphological-brain-networks
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Apr 2, 2023 - Python
Federated multigraph integration with application to connectional brain template estimation.
gradient-descent brain-connectivity hospitals gnns federated-learning graph-neural-networks graph-fusion graph-integration multigraph-data
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Dec 28, 2021 - Python
Federated time-dependent graph evolution prediction with missing timepoints.
missing-data longitudinal-data graph-generation brain-connectivity brain-network predictive-learning federated-learning graph-neural-networks gnn graph-synthesis network-prediction
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Mar 23, 2023 - Python
netNorm (network normalization) framework for multi-view network integration (or fusion), recoded up in Python by Ahmed Nebli.
biomarker-discovery brain-connectivity network-neuroscience brain-networks sample-selection high-order-connectivity connectome-mapping network-integration network-fusion network-normalization multi-view-networks multigraph-integration multigraph-fusion brain-disorders
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Jul 3, 2020 - Python
HCAE (HyperConnectome AutoEncoder) for brain state identification.
brain-connectivity graph-embedding morphological-brain-networks hyperconnectome hyperconnectivity hyperconnectome-autoencoder hypergraph-embedding multiview-graph distribution-alignment hypergraph-convolutional-layers hypergraph-autoencoding
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Oct 19, 2020 - Python
NAGFS (Network Atlas-Guided Feature Selection) for a fast and accurate graph data classification code, recoded by Dogu Can ELCI.
feature-selection biomarker-discovery brain-connectivity graph-representation graph-classification network-neuroscience network-integration network-atlas network-fusion graph-fusion graph-template-learning brain-disorder
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Mar 30, 2020 - Python
Brain Graph Super-Resolution: how to generate high-resolution graphs from low-resolution graphs? (Python3 version)
machine-learning-algorithms cbt brain-connectivity superresolution predictive-learning network-neuroscience graph-superresolution connectional-brain-template generative-learning
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Sep 15, 2020 - Python
ABMT (Adversarial Brain Multiplex Translator) for brain graph translation using geometric generative adversarial network (gGAN).
generative-adversarial-network gan data-generation multiplex graph-generation gender-classification connectome brain-connectivity brain-network graph-embedding predictive-learning geometric-deep-learning brain-networks predictive-intelligence morphological-brain-multiplexes brain-graph-translation predicting-brain-multiplexes
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Sep 20, 2020 - Python
Multigraph generation from a source graph.
brain-connectivity graph-convolutional-networks adversarial-learning gnns graph-neural-network graph-topology multiview-data generative-learning multigraph-generation multiview-connectome
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Nov 16, 2022 - Python
Python package for analysis and visualization of functional ultrasound imaging data.
python neuroscience data-visualization data-analysis neuroimaging ultrasound brain-connectivity fusi
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Mar 23, 2026 - Python
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