Workflows and interfaces for neuroimaging packages
Software platform for clinical neuroimaging studies
Framework for Information Theoretical analysis of Electrophysiological data and Statistics
Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
Brainsprite turns a sprite of brain slices into a 3D interactive web viewer
A virtual optogenetics laboratory
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
Gaussian-Processes Surrogate Optimisation in python
A half-serious project to generate **very** serious brain explosions.
TRAMPOLINO (TRActography Meta-Pipeline cOmmand LINe tOol) is a CLI for brain tractography. It leverages Nipype to offer an immediate way to reconstruct an orientation distribution function, use it to track the streamlines and eventually filter them, all using existing software toolboxes.
Validator for the anatomical fiducial placement protocol
Seed-based resting-state functional connectivity with Nilearn.
Python implementation of RETROICOR - physiology regressors for fMRI preprocessing.
Script to Export Freesurfer-based Parcellation/Segmentation Stats and Provenance as JSON-LD and NIDM
An alternative pipeline execution library to nipype
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