ImputeGAP is a comprehensive Python library for imputation of missing values in time series data. It implements user-friendly APIs to easily visualize, analyze, and repair incomplete time series datasets.

Tool for finding interesting forks of projects on GitHub.

Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.

NMR spectroscopy software for line shape fitting and downstream analysis

SCRY is a web-based application designed to make downstream scRNA-seq-analysis more accessible.

Nextflow pipeline for MS-DAP, a downstream pipeline to generate statistical reports for MS data

This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBA🦁 pipeline.

A Shiny application for creating deeptools plots (heatmap, profile) from bigwigs and bed files in HiPerGator storage

🧬 What are the three stages of NGS/Omics (WGS/WES) data analysis? How do you start, and keep your workflow stress-free and organized? 📒

R Shiny app to produce a heatmap of LCPM (e.g.) for genes in a pathway of interest

A reproducible Nextflow pipeline integrates user-defined input via YAML or Python config, enabling modular downstream RNA-Seq analysis using DESeq2 with outputs at every stage, including batch correction (ComBat-Seq), power analysis, and unfiltered differential and pathway results per contrast. It follows Nextflow training guidel